PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10011386m
Common NameCICLE_v10011386mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family WRKY
Protein Properties Length: 567aa    MW: 62490.1 Da    PI: 6.7421
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10011386mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY105.13.7e-33222279260
                      --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                      +DgynWrKYGqK+vkgse+prsY++Ct+++Cp+kkkvers  d++++ei+Y+g+Hnh+k
  Ciclev10011386m 222 EDGYNWRKYGQKQVKGSENPRSYFKCTFPDCPMKKKVERSL-DGQITEIVYKGSHNHPK 279
                      7****************************************.***************85 PP
2WRKY105.62.5e-33390448159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      ldDgy+WrKYGqK+vkg+++prsYY+Ct++gCpv+k+ver+++d ++v++tYeg+Hnh+
  Ciclev10011386m 390 LDDGYRWRKYGQKVVKGNPNPRSYYKCTTTGCPVRKHVERASHDMRAVITTYEGKHNHD 448
                      59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.7E-28213280IPR003657WRKY domain
PROSITE profilePS5081123.009216280IPR003657WRKY domain
SuperFamilySSF1182909.94E-25217280IPR003657WRKY domain
SMARTSM007742.7E-36221279IPR003657WRKY domain
PfamPF031065.4E-25222278IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.8E-37375450IPR003657WRKY domain
SuperFamilySSF1182902.75E-29382450IPR003657WRKY domain
PROSITE profilePS5081138.595385450IPR003657WRKY domain
SMARTSM007745.5E-39390449IPR003657WRKY domain
PfamPF031061.0E-25391448IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0010120Biological Processcamalexin biosynthetic process
GO:0010200Biological Processresponse to chitin
GO:0010508Biological Processpositive regulation of autophagy
GO:0042742Biological Processdefense response to bacterium
GO:0050832Biological Processdefense response to fungus
GO:0070370Biological Processcellular heat acclimation
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 567 aa     Download sequence    Send to blast
MASSSFFMNN SMDSFSQNRT TTTANTTSSS STITSSWGFT NYTNSDHQIG LEIPKFKSLS  60
PSSLPLSPPP VSPSSFLSIP PSGFSPGALL DSPVLFSNIL ASPTTEAFNW ISNQQNISKM  120
EENNYFDFSF QTQTRPSSNS VSVQEESVKR QQEPWNFNKP TKESDFSTEN PGVKSEFAPM  180
ESFSSDMASY QTNVQSNAAP QSGNYGHYNQ SSAYTREQKR SEDGYNWRKY GQKQVKGSEN  240
PRSYFKCTFP DCPMKKKVER SLDGQITEIV YKGSHNHPKP TSTRRSSSSQ SMQHSTCANS  300
DLSDQSVGPL GNTHTDSFSM QNESSTSFGE DDFVEQGSPT SNPIGDDDEN EPDAKRWKGE  360
NDIEGVIGTG SRTVREPRIV VQTTSDIDIL DDGYRWRKYG QKVVKGNPNP RSYYKCTTTG  420
CPVRKHVERA SHDMRAVITT YEGKHNHDVP AARGSGYTLT RPLPNTNTGN VPVPIRPSVT  480
AMASHSNLSN YSNSLNNTRF PSSSGSQAPY TAAMLQSTGS YGISGFAKPT GSYMMNQTQQ  540
SDGLFNRAKD EPRDDLFLES FLNSNS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2lex_A2e-37215451878Probable WRKY transcription factor 4
1wj2_A2e-37215451878Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00299DAPTransfer from AT2G38470Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006429505.10.0hypothetical protein CICLE_v10011386mg
RefseqXP_006481125.10.0PREDICTED: probable WRKY transcription factor 33 isoform X1
SwissprotQ8S8P51e-129WRK33_ARATH; Probable WRKY transcription factor 33
TrEMBLV4SUS10.0V4SUS1_9R
STRINGPOPTR_0016s13600.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM45832755
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38470.11e-110WRKY DNA-binding protein 33